{"product_id":"genomics-analysis-with-spark-docker-and-clouds-a-guide-to-big-data-tools-for-genomics-research-9781491975190","title":"Genomics Analysis with Spark, Docker, and Clouds: A Guide to Big Data Tools for Genomics Research","description":"\u003cp\u003e • Author(s): Brian D. O'Connor\u003cbr\u003e • Publisher: O'Reilly Media\u003cbr\u003e • Publisher Imprint: O'Reilly Media\u003cbr\u003e • BISAC: Bioinformatics\u003c\/p\u003e\u003cp\u003e\u003c\/p\u003e\u003cp\u003eData in the genomics field is booming. In just a few years, organizations such as the National Institutes of Health (NIH) will host 50+ petabytesâ or over 50 million gigabytesâ of genomic data, and theyâ re turning to cloud infrastructure to make that data available to the research community. How do you adapt analysis tools and protocols to access and analyze that volume of data in the cloud? \u003c\/p\u003e\u003cp\u003e With this practical book, researchers will learn how to work with genomics algorithms using open source tools including the Genome Analysis Toolkit (GATK), Docker, WDL, and Terra. Geraldine Van der Auwera, longtime custodian of the GATK user community, and Brian Oâ Connor of the UC Santa Cruz Genomics Institute, guide you through the process. Youâ ll learn by working with real data and genomics algorithms from the field. \u003c\/p\u003e\u003cp\u003e This book covers: \u003c\/p\u003e\u003cul\u003e \u003cli\u003eEssential genomics and computing technology background \u003c\/li\u003e\n\u003cli\u003eBasic cloud computing operations \u003c\/li\u003e\n\u003cli\u003eGetting started with GATK, plus three major GATK Best Practices pipelines \u003c\/li\u003e\n\u003cli\u003eAutomating analysis with scripted workflows using WDL and Cromwell \u003c\/li\u003e\n\u003cli\u003eScaling up workflow execution in the cloud, including parallelization and cost optimization \u003c\/li\u003e\n\u003cli\u003eInteractive analysis in the cloud using Jupyter notebooks \u003c\/li\u003e\n\u003cli\u003eSecure collaboration and computational reproducibility using Terra \u003c\/li\u003e\n\u003c\/ul\u003e","brand":"O'Reilly Media","offers":[{"title":"Paperback","offer_id":45030756876439,"sku":"9781491975190","price":6257.0,"currency_code":"INR","in_stock":true}],"thumbnail_url":"\/\/cdn.shopify.com\/s\/files\/1\/0666\/3471\/1191\/files\/9781491975190.webp?v=1767896669","url":"https:\/\/atlanticbooks.com\/products\/genomics-analysis-with-spark-docker-and-clouds-a-guide-to-big-data-tools-for-genomics-research-9781491975190","provider":"Atlantic Books","version":"1.0","type":"link"}