{"product_id":"reproducible-bioinformatics-with-python-how-to-write-flexible-documented-tested-python-code-for-research-computing-9781098100889","title":"Reproducible Bioinformatics with Python: How to Write Flexible, Documented, Tested Python Code for Research Computing","description":"\u003cp\u003e • Author(s): Ken Youens-Clark\u003cbr\u003e • Publisher: O'Reilly Media\u003cbr\u003e • Publisher Imprint: O'Reilly Media\u003cbr\u003e • BISAC: Bioinformatics\u003c\/p\u003e\u003cp\u003e\u003c\/p\u003e\u003cp\u003eLife scientists today urgently need training in bioinformatics skills. Too many bioinformatics programs are poorly written and barely maintained, usually by students and researchers who've never learned basic programming skills. This practical guide shows postdoc bioinformatics professionals and students how to exploit the best parts of Python to solve problems in biology while creating documented, tested, reproducible software. \u003c\/p\u003e\u003cp\u003e Ken Youens-Clark, author of \u003ci\u003eTiny Python Projects\u003c\/i\u003e (Manning), demonstrates not only how to write effective Python code but also how to use tests to write and refactor scientific programs. You'll learn the latest Python features and tools including linters, formatters, type checkers, and tests to create documented and tested programs. You'll also tackle 14 challenges in Rosalind, a problem-solving platform for learning bioinformatics and programming. \u003c\/p\u003e\u003cul\u003e \u003cli\u003eCreate command-line Python programs to document and validate parameters \u003c\/li\u003e\n\u003cli\u003eWrite tests to verify refactor programs and confirm they're correct \u003c\/li\u003e\n\u003cli\u003eAddress bioinformatics ideas using Python data structures and modules such as Biopython \u003c\/li\u003e\n\u003cli\u003eCreate reproducible shortcuts and workflows using makefiles \u003c\/li\u003e\n\u003cli\u003eParse essential bioinformatics file formats such as FASTA and FASTQ \u003c\/li\u003e\n\u003cli\u003eFind patterns of text using regular expressions \u003c\/li\u003e\n\u003cli\u003eUse higher-order functions in Python like filter(), map(), and reduce() \u003c\/li\u003e\n\u003c\/ul\u003e","brand":"O'Reilly Media","offers":[{"title":"Paperback","offer_id":45034417815703,"sku":"9781098100889","price":6854.0,"currency_code":"INR","in_stock":true}],"thumbnail_url":"\/\/cdn.shopify.com\/s\/files\/1\/0666\/3471\/1191\/files\/9781098100889.webp?v=1769198708","url":"https:\/\/atlanticbooks.com\/products\/reproducible-bioinformatics-with-python-how-to-write-flexible-documented-tested-python-code-for-research-computing-9781098100889","provider":"Atlantic Books","version":"1.0","type":"link"}