Name: Biological Sequence Analysis Using The Seqan C++ Library
Brand: T&F
SKU: 9781420076233
Price: 15971.0 INR
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Biological Sequence Analysis Using The Seqan C++ Library

by Andreas Gogol-D÷ring , Knut Reinert

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ISBN13: 9781420076233
Binding: Hardcover
Subject: Bio-Science and Agriculture
Publisher: T&F
Publisher Imprint: CRC Press
Publication Date: January 1, 2010
Pages: 329
Original Price: GBP 200.0
Language: English
Edition: N/A
Item Weight: 590 grams
BISAC Subject(s): Bioinformatics, Life Sciences / Genetics & Genomics, and Life Sciences / Molecular Biology

About The Book

An Easy-to-Use Research Tool for Algorithm Testing and Development

Before the SeqAn project, there was clearly a lack of available implementations in sequence analysis, even for standard tasks. Implementations of needed algorithmic components were either unavailable or hard to access in third-party monolithic software products. Addressing these concerns, the developers of SeqAn created a comprehensive, easy-to-use, open source C++ library of efficient algorithms and data structures for the analysis of biological sequences. Written by the founders of this project, Biological Sequence Analysis Using the SeqAn C++ Library covers the SeqAn library, its documentation, and the supporting infrastructure.

The first part of the book describes the general library design. It introduces biological sequence analysis problems, discusses the benefit of using software libraries, summarizes the design principles and goals of SeqAn, details the main programming techniques used in SeqAn, and demonstrates the application of these techniques in various examples. Focusing on the components provided by SeqAn, the second part explores basic functionality, sequence data structures, alignments, pattern and motif searching, string indices, and graphs. The last part illustrates applications of SeqAn to genome alignment, consensus sequence in assembly projects, suffix array construction, and more.

This handy book describes a user-friendly library of efficient data types and algorithms for sequence analysis in computational biology. SeqAn enables not only the implementation of new algorithms, but also the sound analysis and comparison of existing algorithms.

Visit SeqAn for more information.

About The Author

Co-founder of the SeqAn project, Andreas Gogol-Döring works at the Max Delbrück Center for Molecular Medicine in Berlin, Germany. He was previously a research associate in the Algorithmic Bioinformatics group in the Department of Computer Science at Freie Universität Berlin in Germany.

Co-founder of the SeqAn project, Knut Reinert is a professor and head of the Algorithmic Bioinformatics group in the Department of Computer Science at Freie Universität Berlin in Germany.

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